Publicerad i 2009/06/08 av Europa League. Avsnitt: Europa League , Europa League , Tredje kvalomgången .
| Agg. | 1: a åket | 2: a åket | ||
| Bnei Yehuda FC | 2-0 | FC Paços de Ferreira | 1-0 | 1-0 |
| SC Vaslui | 3-1 | AC Omonia | 2-0 | 1-1 |
| FK Slavija Sarajevo | 1-5 | MFK Košice | 0-2 | 1-3 |
| IFK Göteborg | 2-4 | Hapoel Tel-Aviv FC | 1-3 | 1-1 |
| PSV Eindhoven | 2-0 | Cherno More Varna | 1-0 | 1-0 |
| FC Metallurh Donetsk | 5-0 | NK IB Ljubljana | 2-0 | 3-0 |
| Vålerenga Fotball | 2-2 | PAOK FC | 1-2 | 1-0 |
| SK Rapid Wien | 4-3 | Kinyras Peyias FC | 2-1 | 2-2 |
| FC Honka Espoo | 1-3 | FK Qarabağ | 0-1 | 1-2 |
| FC Vaduz | 0-3 | FC Slovan Liberec | 0-1 | 0-2 |
| St Patrick's Ath. FC | 3-3 | Krylya Sovetov Samara | 1-0 | 2-3 |
| Randers FC | 1-4 | Hamburger SV | 0-4 | 1-0 |
| Tromsø IL | 4-1 | NK Slaven Koprivnica | 2-1 | 2-0 |
| Brøndby IF | 3-3 | Legia Warszawa | 1-1 | 2-2 |
| FK Vojvodina | 3-5 | FK Austria Wien | 1-1 | 2-4 |
| PFC CSKA Sofia | 2-1 | Derry City FC | 1-0 | 1-1 |
| FC Steaua Bukarest | 6-1 | Motherwell FC | 3-0 | 3-1 |
| MSK Žilina | 2-1 | HNK Hajduk Split | 1-1 | 1-0 |
| SC Braga | 1-4 | IF Elfsborg | 1-2 | 0-2 |
| Aberdeen FC | 1-8 | SK Sigma Olomouc | 1-5 | 0-3 |
| FK Rabotnicki | 3-7 | Odense BK | 3-4 | 0-3 |
| FK Sevojno | 0-4 | LOSC Lille Métropole | 0-2 | 0-2 |
| FK Petrovac | 1-7 | SK Sturm Graz | 1-2 | 0-5 |
| Fenerbahçe SK | 6-2 | Budapest Honvéd FC | 5-1 | 1-1 |
| Club Brugge KV | 4-3 | FC Lahti | 3-2 | 1-1 |
| Athletic Club Bilbao | 2-2 | BSC Young Boys | 0-1 | 2-1 |
| KR Reykjavik | 3-5 | FC Basel 1893 | 2-2 | 1-3 |
| Maccabi Netanya FC | 1-10 | Galatasaray AS | 1-4 | 0-6 |
| FC Dinamo Tbilisi | 4-5 | FK Crvena Zvezda | 2-0 | 2-5 |
| KSP Polonia Warszawa | 1-4 | NAC Breda | 0-1 | 1-3 |
| FK Vėtra | 0-6 | Fulham FC | 0-3 | 0-3 |
| Helsingborgs IF | 3-3 | FK Sarajevo | 2-1 | 1-2 |
| Fredrikstad FK | 3-7 | KKS Lech Poznań | 1-6 | 2-1 |
| HNK Rijeka | 1-4 | FC Metalist Charkiv | 1-2 | 0-2 |
| AS Roma | 10-2 | KAA Gent | 3-1 | 7-1 |
